SNP Profiles of JA 62 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CC	GG	CC	CT	CT	AC	CT	GT	CT	CC	AA	CC	AA	TT
1._JA_6_/2_[POU]	CC	GG	CC	CT	CT	_	CT	GT	CT	CC	AA	CC	AA	TT
2._JA_6_/2_[POU]	CC	GG	CC	CT	CT	_	CT	GT	CT	CC	AA	CC	AA	TT
3._JA_6_/2_[POU]	CC	GG	CC	CT	CT	_	CT	GT	CT	CC	AA	CC	AA	TT
4._JA_6_/2_[POU]	CC	GG	CC	CT	CT	_	CT	GT	CT	CC	AA	CC	AA	TT
5._JA_6_/2_[POU]	CC	GG	CC	CT	CT	_	CT	GT	CT	CC	AA	CC	AA	TT
6._JA_6_/2_[POU]	CC	GG	CC	CT	CT	_	CT	GT	CT	CC	AA	CC	AA	TT
7._JA_6_/2_[POU]	CC	GG	CC	CT	CT	_	CT	GT	CT	CC	AA	CC	AA	TT
8._JA_6_/2_[POU]	CC	GG	CC	CT	CT	_	CT	GT	CT	CC	AA	CC	AA	TT
9._JA_6_/2_[POU]	CC	GG	CC	CT	CT	_	CT	GT	CT	CC	AA	CC	AA	TT
10._JA_6_/2_[POU]	CC	GG	CC	CT	CT	_	CT	GT	CT	CC	AA	CC	AA	TT
11._GC-08-091-2-14	CC	GG	CC	CT	CT	_	CT	GT	CT	CC	AA	CC	AA	TT
12._GC-08-091-2-14	CC	GG	CC	CT	CT	_	CT	GT	CT	CC	AA	CC	AA	TT
13._JA_6_/2_[POU]	CC	GG	CC	CT	CT	_	CT	GT	CT	CC	AA	CC	AA	TT
14._JA_6_/2_[POU]	CC	GG	CC	CT	CT	CC	CT	GT	CT	CC	AA	CC	AA	TT
15._JA_6_/2_[POU]	CT	AG	CG	CT	CT	AA	CT	GT	CT	CT	AG	CC	AG	TT

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AT	GG	CT	CT	GG	AA	CT	CC	CC	GG	CC	AA	AG	AG
1._JA_6_/2_[POU]	AT	GG	CT	CT	GG	AA	CT	CC	CC	GG	CC	AA	AG	AG
2._JA_6_/2_[POU]	AT	GG	CT	CT	GG	AA	CT	CC	CC	GG	CC	AA	AG	AG
3._JA_6_/2_[POU]	AT	GG	CT	CT	GG	AA	CT	CC	CC	GG	CC	AA	AG	AG
4._JA_6_/2_[POU]	AT	GG	CT	CT	GG	AA	CT	CC	CC	GG	CC	AA	AG	AG
5._JA_6_/2_[POU]	AT	GG	CT	CT	GG	AA	CT	CC	CC	GG	CC	AA	AG	AG
6._JA_6_/2_[POU]	AT	GG	CT	CT	GG	AA	CT	CC	CC	GG	CC	AA	AG	AG
7._JA_6_/2_[POU]	AT	GG	CT	CT	GG	AA	CT	CC	CC	GG	CC	AA	AG	AG
8._JA_6_/2_[POU]	AT	GG	CT	CT	GG	AA	CT	CC	CC	GG	CC	AA	AG	AG
9._JA_6_/2_[POU]	AT	GG	CT	CT	GG	AA	CT	CC	CC	GG	CC	AA	AG	AG
10._JA_6_/2_[POU]	AT	GG	CT	CT	GG	AA	CT	CC	CC	GG	CC	AA	AG	AG
11._GC-08-091-2-14	AT	GG	CT	CT	GG	AA	CT	CC	CC	GG	CC	AA	AG	AG
12._GC-08-091-2-14	AT	GG	CT	CT	GG	AA	CT	CC	CC	GG	CC	AA	AG	AG
13._JA_6_/2_[POU]	AT	GG	CT	CT	GG	AA	CT	CC	CC	GG	CC	AA	AG	AG
14._JA_6_/2_[POU]	AT	GG	CT	CT	GG	AG	CT	CC	CC	GG	CC	AA	AG	AG
15._JA_6_/2_[POU]	AT	GG	CT	CT	GG	AA	TT	CC	CG	GT	CT	AC	AG	GG

	29	30	31	32	33	34	35	36	37	38
_Input profile	AT	CC	AA	CC	AC	CT	GT	CC	AT	CG	X_X	X_X	X_X	X_X
1._JA_6_/2_[POU]	AT	CC	AA	CC	AC	CT	GT	CC	AT	CG	X_X	X_X	X_X	X_X
2._JA_6_/2_[POU]	AT	CC	AA	CC	AC	CT	GT	CC	AT	CG	X_X	X_X	X_X	X_X
3._JA_6_/2_[POU]	AT	CC	AA	CC	AC	CT	GT	CC	AT	CG	X_X	X_X	X_X	X_X
4._JA_6_/2_[POU]	AT	CC	AA	CC	AC	CT	GT	CC	AT	CG	X_X	X_X	X_X	X_X
5._JA_6_/2_[POU]	AT	CC	AA	CC	AC	CT	GT	CC	AT	CG	X_X	X_X	X_X	X_X
6._JA_6_/2_[POU]	AT	CC	AA	CC	AC	CT	GT	CC	AT	CG	X_X	X_X	X_X	X_X
7._JA_6_/2_[POU]	AT	CC	AA	CC	AC	CT	GT	CC	AT	CG	X_X	X_X	X_X	X_X
8._JA_6_/2_[POU]	AT	CC	AA	CC	AC	CT	GT	CC	AT	CG	X_X	X_X	X_X	X_X
9._JA_6_/2_[POU]	AT	CC	AA	CC	AC	CT	GT	CC	AT	CG	X_X	X_X	X_X	X_X
10._JA_6_/2_[POU]	AT	CC	AA	CC	AC	CT	GT	CC	AT	CG	X_X	X_X	X_X	X_X
11._GC-08-091-2-14	AT	CC	AA	CC	AC	CT	GT	CC	AT	CG	X_X	X_X	X_X	X_X
12._GC-08-091-2-14	AT	CC	AA	CC	AC	CT	GT	CC	AT	CG	X_X	X_X	X_X	X_X
13._JA_6_/2_[POU]	AT	CC	AA	CC	AC	_	GT	CC	AT	CG	X_X	X_X	X_X	X_X
14._JA_6_/2_[POU]	AT	CC	AA	CC	AC	CT	GT	CC	AT	CG	X_X	X_X	X_X	X_X
15._JA_6_/2_[POU]	AT	CC	AA	CG	CC	CT	GT	CC	AT	CG	X_X	X_X	X_X	X_X

Input profile: JA_6_/2_[POU]

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8214 15

Dapeng Zhang, 2016

1._JA_6_/2_[POU]

identical
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8214 3 > FP

Dapeng Zhang, 2016

2._JA_6_/2_[POU]

identical
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8214 2 > FP

Dapeng Zhang, 2016

3._JA_6_/2_[POU]

identical
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8214 1 > FP

Dapeng Zhang, 2016

4._JA_6_/2_[POU]

identical
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8214 13

Dapeng Zhang, 2016

5._JA_6_/2_[POU]

identical
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8214 11

Dapeng Zhang, 2016

6._JA_6_/2_[POU]

identical
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8214 9

Dapeng Zhang, 2016

7._JA_6_/2_[POU]

identical
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8214 7

Dapeng Zhang, 2016

8._JA_6_/2_[POU]

identical
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8214 5

Dapeng Zhang, 2016

9._JA_6_/2_[POU]

identical
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8214 4

Dapeng Zhang, 2016

Population Assignment:

View Data

Dapeng Zhang, 2016

10._JA_6_/2_[POU]

identical
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8214 4

Dapeng Zhang, 2016

Population Assignment:

View Data

Dapeng Zhang, 2016

11._JA_6_/2_[POU] GC-08-091-2-14

identical
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

Mars, 2018

12._JA_6_/2_[POU] GC-08-091-2-14

identical
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP2

Mars, 2018

13._JA_6_/2_[POU]

identical
36 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8214 10

Dapeng Zhang, 2016

14._JA_6_/2_[POU]

97.4 %
38 shared markers

View View all Clone Any

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Marper C 364

Dapeng Zhang, 2016

15._JA_6_/2_[POU]

80.3 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8214 12

Dapeng Zhang, 2016

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1062	12	TcSNP1060	13	TcSNP998	14	TcSNP994	15	TcSNP953
16	TcSNP929	17	TcSNP917	18	TcSNP891	19	TcSNP872	20	TcSNP645
21	TcSNP619	22	TcSNP591	23	TcSNP577	24	TcSNP560	25	TcSNP534
26	TcSNP529	27	TcSNP469	28	TcSNP429	29	TcSNP372	30	TcSNP242
31	TcSNP230	32	TcSNP226	33	TcSNP193	34	TcSNP151	35	TcSNP150
36	TcSNP144	37	TcSNP32	38	TcSNP25

SNP Profiles of JA 62 View Data

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Input profile: JA_6_/2_[POU]

1._JA_6_/2_[POU]

identical 37 shared markers

2._JA_6_/2_[POU]

identical 37 shared markers

3._JA_6_/2_[POU]

identical 37 shared markers

4._JA_6_/2_[POU]

identical 37 shared markers

5._JA_6_/2_[POU]

identical 37 shared markers

6._JA_6_/2_[POU]

identical 37 shared markers

7._JA_6_/2_[POU]

identical 37 shared markers

8._JA_6_/2_[POU]

identical 37 shared markers

9._JA_6_/2_[POU]

identical 37 shared markers

10._JA_6_/2_[POU]

identical 37 shared markers

11._JA_6_/2_[POU] GC-08-091-2-14

identical 37 shared markers

12._JA_6_/2_[POU] GC-08-091-2-14

identical 37 shared markers

13._JA_6_/2_[POU]

identical 36 shared markers

14._JA_6_/2_[POU]

97.4 % 38 shared markers

15._JA_6_/2_[POU]

80.3 % 38 shared markers

identical
37 shared markers

identical
37 shared markers

identical
37 shared markers

identical
37 shared markers

identical
37 shared markers

identical
37 shared markers

identical
37 shared markers

identical
37 shared markers

identical
37 shared markers

identical
37 shared markers

identical
37 shared markers

identical
37 shared markers

identical
36 shared markers

97.4 %
38 shared markers

80.3 %
38 shared markers